Close Menu

Publications

R. Khaliullin and J. D. Schieber, “Self-consistent modeling of constraint release in a single-chain mean-field slip-link model,” Macromolecules, 42, 7504-7517 (2009)

Fadia Zaknoon, Hadar Sarig, Shahar Rotem, Liran Livneh, Andrey Ivankin, David Gidalevitz, and Amram Mor. Antibacterial properties and mode of action of a short acyl-lysyl oligomer, 2009, Antimicrobial Agents and Chemotherapy, 53, 3422-3429.

Andrey Ivankin, Ivan Kuzmenko, and David Gidalevitz, Cholesterol-Phospholipid Interactions: New Insights from Surface X-ray Scattering Data, 2009, Physical Review Letters., submitted.

Frances Neville, Andrey Ivankin,Oleg Konovalov, and David Gidalevitz , Are electrostatic forces predominant in lipid discrimination by α-helical cathelicidin peptides? 2009, Biochimica et Biophysica Acta –Biomembranes, submitted.

Hadar Sarig, Liran Livneh, V. Held-Kuznetsov, Fadia Zaknoon, Shahar Rotem, Andrey Ivankin, David Gidalevitz, and Amram Mor, A miniature mimic of host defense peptides with systemic antibacterial efficacy, Nature Medicine, 2009, Submitted.

Multiscale Simulations of Heterogeneous Model Membranes”, with S. PanditBiochim. Bio- phys. Acta 1788 136 - 148 (2009) “An Improved United Atom> Force Field for Simulation of Mixed Lipid Bilayers”, with S. W. Chiu, S.Pandit, and E. Jakobsson J. Phys. Chem. B11327482763 (2009)

Singh, A., Lee, I.S., and Myerson, A.S. (2009). Concomitant Crystallization of ROY on Patterned Substrates: Using a High Throughput Method to Improve the Chances of Crystallization of Different Polymorphs. Crystal Growth and Design 9, 1182-1185.

Erdemir, D, Lee, A.Y., and Myerson, A.S. (2009). Nucleation of Crystals From Solution: Classical and Two Step Models. Accounts of Chemical Research 42, 621-629.

Aldabaibeh, N., Jones, M., Myerson, A.S., Ulrich, J. (2009). The Solubility of Orthorhombic Lysozyme Crystals Grown at Low pH. Crystal Growth and Design 9, 3313-3317.

Alvarez, A., Sing, A., and Myerson, A.S. (2009). Polymorph Screening: Comparing a Semi-Automated Approach with a High Throughput Method. Crystal Growth and Design 9, 4181-4188.

“Evidence for Novel β-Sheet Structures in Iowa-mutant β -Amyloid Fibrils”. Robert Tycko, Kimberly L. Sciarretta, Joseph P. R. O. Orgel, and Stephen C. Meredith. Biochemistry. 48, p6072-6084 (2009).

“On the molecular packing of collagen”. Orgel, Joseph, P.R.O. Acta. Cryst. D65, p1009-1010 (2009).

“Decorin Core Protein (Decoron) Shape Complements Collagen Fibril Surface Structure and Mediates its Binding”. Joseph P.R.O. Orgel, Aya Eidd, Olga Antipova, Jordi Bella, John Scott. PLoS ONE (2009).

Yu-Chieh Chiu, Jeffery C. Larson, Victor H. Perez-Luna and Eric M. Brey “Formation of Microchannels in Poly(ethylene glycol) Hydrogels by Selective Degradation of Patterned Microstructures”, Chem. Mater., 21(8), 1677–1682 (2009).

“A benchmark study on the thermal conductivity of nanofluids,” J. Buongiorno, D.C. Venerus, et al., accepted to J. Appl. Phys.. (2009).

“Nonequilibrium thermodynamics of transport through moving interfaces with application to bubble growth and collapse,” H.C. Öttinger, D. Bedeaux and D.C. Venerus, Phys. Rev. E., 80,021606 (2009).

“Anisotropic thermal conductivity in cross-linked poly-butadienes subjected to uniaxial elongation,” D.C. Venerus and D.N. Kolev, Macromol., 43, 2594-2598 (2009).

"Characterization of Type I Collagen Gels Modified by Non-Enzymatic Glycosylation," M. Francis-Sedlak, S. Uriel, J.C. Larson, D.C. Venerus, H.P. Greisler, E.M. Brey, Biomat., 30, 1851-1856 (2009).

“Direct comparisons of equibiaxial elongational viscosity measurements from Lubricated Squeezing Flow (LSF) and the MultiAxiale Dehnung (MAD) rheometer,” T. Guadarrama- Medina, T.-Y. Shiu, and D.C. Venerus, Rheol. Acta, 48, 11-17 (2009).

R. N. Khaliullin and J. D. Schieber, "Analytic expressions for the statistics of the primitive-path length in entangled polymers," P hys. Rev. Lett. , 100 (18), 188302-4 (May 2008)

"Collagen fibril architecture, domain organization and triple-helical conformation govern its proteolysis". Shiamalee Perumal, Olga Antipova, Joseph P.R.O. Orgel PNAS , 105, p2824-2829 (2008).

"Cell and matrix interaction domains on the type I collagen fibril". Sweeney, S.M., Orgel, J.P., Antipova, O., Perumal, S., DiLullo, G., Fertala, A., Turner, K., Ala-Kokko, L., Forlino A., Cabral, W.A., Barnes, A., Marini, J.C., and San Antonio, J.D. J. Biol. Chem.283, p21187-21197 (2008).

Lee, I.S., Lee, A.Y., and Myerson, A.S., (2008). Concomitant Polymorphism in Confined Environment: Implication to Crystal Form Screening. Pharmaceutical Research,25, 960-968.

Lee, I.S., Kim, K.T., Lee, A.Y. and Myerson, A.S., (2008). Concomitant Crystallization of Glycine on Patterned Substrates: The Effect of pH on the Polymorphic Outcome. Crystal Growth and Design, 8, 108-113.

Sun, X., Garetz, B.A., and Myerson, A.S., (2008). Polarization of Crystal Structure in the Non-Photochemical Laser Induced Nucleation of Supersaturated Aqueous L-Histidine. Crystal Growth and Design 8, 1720-1722.

Nathaniel P. Chongsiriwatana, James A. Patch, Ann M. Czyzewski, Michelle T. Dohm, Andrey Ivankin, David Gidalevitz, Ronald N. Zuckermann, and Annelise E. Barron, Peptoids that mimic the structure, function, and mechanism of helical antimicrobial peptides Proceedings of the National Academy of Sciences U.S.A , 2008, 105, 2794-2799

Frances Neville, Yuji Ishitsuka, Chris S. Hodges, Oleg Konovalov, Alan J. Waring, Robert Lehrer, Ka Yee C. Lee, and David Gidalevitz , Protegrin interaction with lipid monolayers: grazing incidence X-ray diffraction and x-ray reflectivity study, 2008, Soft Matter, 4, 1665 - 1674

"Cholesterol Packing around Lipids with Saturated and Unsaturated Chains: A Simulation Study", H. Larry Scott with S. Pandit, S. W. Chiu, E. Jakobsson, and A. Grama, Langmuir 24 6858 - 6865 (2008)

"Compliance effects on the torsional flow of a viscoelastic fluid", Dutcher CS, Venerus DC, JOURNAL OF NON-NEWTONIAN FLUID MECHANICS, 150 ( 2-3), 154-161 ( 2008)

"Lubricated optical rheometer for the study of two-dimensional complex flows of polymer melts", Soulages J, Schweizer T, Venerus DC, et al., JOURNAL OF NON-NEWTONIAN FLUID MECHANICS, 150 (1), 43-55 (2008)

"Direct comparisons of equibiaxial elongational viscosity measurements from Lubricated Squeezing Flow (LSF) and the MultiAxiale Dehnung (MAD) rheometer," T. Guadarrama-Medina, T.-Y. Shiu, and D.C. Venerus, Rheol. Acta, in press (2008).

"Lubricated cross-slot flow of a low density polyethylene melt," J. Soulages, T. Schweizer, D.C. Venerus, M. Kröger and H.C. Öttinger, J.Non-Newt. Fluid Mech. 154, 52-64 (2008).

J. D. Schieber , D. M. Nair and T. Kitkrailard, "Comprehensive comparisons with nonlinear flow data of a consistently unconstrained Brownian slip-link model," J. Rheol. , 51 (6), 1111—1141 (2007).

F. Xu, M. M. Denn and J. D. Schieber, "Stochastic chain simulation of wall slip in entangled polymer melts," J. Rheol. , 51 (3), 451–464 (May 2007).

"Flanking polyproline sequences inhibit β-sheet structure in polyglutamine segments by inducing PPII-like helix structure". Gregory Darnell, Joseph Orgel, Reinhard Paul, and Stephen Meredith. Journal of Molecular Biology.374, p688-704 (2007).

Erdemir, D., Chattopadhyay, S., Guo, L., Ilavsky, J., Amentitsh, H., Segre, and Myerson, A.S. (2007). Relationship Between Self-Association of Glycine Molecules in Supersaturated Solutions and Solid State Outcome. Physical Review Letters, 99, 115702.

Erdemir, D., Lee, A.Y., and Myerson, A.S., (2007). Polymorph Selection: The Role of Nucleation, Crystal Growth and Molecular Modeling. Current Opinion in Drug Discovery and Development, 10, 746-755.

Frances Neville, David Gidalevitz, Girish Kale, Andrew Nelson, Electrochemical screening of anti-microbial peptide LL-37 interaction with phospholipids Bioelectrochemistry, 2007, 70 (2): 205-213

"Lateral organization in lipid-cholesterol mixed bilayers", H. Larry Scott with S. Pandit, G. Khelashvili, E. Jakobsson, and A. Grama, Biophys. J. 92 440 - 448 (2007).

"Cholesterol Surrogates: a Comparison of Cholesterol and 16:0 Ceramide in POPC Bilayers", H. Larry Scott with S. Pandit, S. W. Chiu, E. Jakobsson, and A. Grama, Biophys. J. 92 920-927 (2007).

Georgia Papavasiliou, Víctor H. Pérez-Luna, Preedarat Songprawat, Emily A. Hammes, Megan Morris, and Eric M. Brey "Three Dimensional Patterning of Poly(ethylene glycol) Hydrogels Through Surface Initiated Photopolymerization", Mehta, M.; Hanumanthaiah, C.; Betala, P.A.; Hong, Z.; Roh, S.; Buttner, W.; Penrose, W. R.; Stetter, J.R. and Pérez-Luna, V.H.; "Detection of proteins and bacteria using an array of feedback capacitance sensors", Biosensors and Bioelectronics, 23 (5), 728-734, (2007).

Lee, S.; Pérez-Luna, V.H.; "Surface-Grafted Hybrid Material Consisting of Gold Nanoparticles-Dextran Exhibits Mobility and Reversible Aggregation on a Surface", Langmuir23 (9), 5097 -5099, (2007).

"Free surface effects on normal stress measurements in cone and plate flow",
Venerus DC, APPLIED RHEOLOGY, 17( 3), 36494, (2007).